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forgemia.inra.fr / gafl 94 Repositories

Bioinformatics git Unité GAFL, Génétique et Amélioration des Fruits et Légumes UR1052

gafl/users/marie_serrie/serrie_gwas_biotic_stress_prunus_2024

Last synced at: 7 months ago - Stars: 0 - Forks: 0

gafl/users/javier_belinchon/nanopore-adaptive-sampling-for-melon-nlrome

Last synced at: 7 months ago - Stars: 0 - Forks: 0

gafl/users/jacques_lagnel/thaliadb37_docker

Last synced at: 7 months ago - Stars: 0 - Forks: 0

gafl/users/alexandre_hereil/fruits_institut_pasteur

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gafl/users/alexandre_hereil/projet_racine_champs

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gafl/pipelines_snakemake/wgs_gatk

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

gafl/pipelines_snakemake/easy_qtlseq

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gafl/pipelines_snakemake/rnaseq_de_snps

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 1

gafl/i2b/dev_embedded_android/application_recolte/django_database

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

gafl/i2b/dev_embedded_android/application_recolte/appli_recolte_android_v2

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

gafl/pipelines_snakemake/rnaseq-pipeline

Last synced at: 7 months ago - Stars: 0 - Forks: 0

gafl/pipelines_snakemake/gbs_se_gatk

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

gafl/singularity/picrust2

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

gafl/scripts/utility_tutorial_links

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

gafl/scripts/cut_scaffolds_to_contigs_by_n

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

gafl/pipelines_snakemake/allmine

Last synced at: 6 months ago - Stars: 0 - Forks: 0

gafl/singularity/miniconda3_py37_4.11.0

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

gafl/singularity/gatk4

Last synced at: 6 months ago - Stars: 0 - Forks: 0

gafl/pipelines_snakemake/check_sequencing

Check fastq files for md5 and number of lines between fastq1 and fastq2

Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

gafl/snakemake_modules

Last synced at: 6 months ago - Stars: 0 - Forks: 1

gafl/scripts/genome_feature_distribution

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gafl/singularity/dicoexpress

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gafl/singularity/tabix

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gafl/singularity/primer3

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gafl/singularity/cdna_cupcake

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gafl/singularity/transdecoder

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gafl/singularity/Bionano_solve

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gafl/singularity/htseq

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gafl/singularity/cutadapt

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gafl/singularity/trimmomatic

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gafl/singularity/BUSCO

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gafl/singularity/flye

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gafl/singularity/sra-tools

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gafl/singularity/minimap2

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gafl/singularity/stringtie

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gafl/singularity/vcftools

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gafl/singularity/seqkit

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gafl/singularity/seqtk

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gafl/singularity/samtools

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gafl/singularity/freebayes

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gafl/singularity/multiqc

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gafl/singularity/fastqc

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gafl/singularity/fastp

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gafl/singularity/biopython

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gafl/singularity/bwa

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gafl/singularity/bowtie2

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gafl/singularity/blast

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gafl/singularity/bioawk

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gafl/singularity/bedtools

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gafl/singularity/bamutil

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gafl/singularity/bamtools

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gafl/singularity/varscan

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gafl/singularity/star

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gafl/singularity/bcftools

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gafl/singularity/whatshap

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gafl/singularity/trinotate

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gafl/singularity/trinity

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gafl/singularity/sibelia

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gafl/singularity/scaff10x

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gafl/singularity/sambamba

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gafl/singularity/rsem

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gafl/singularity/root_imaging

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gafl/singularity/racon

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gafl/singularity/quickmerge

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gafl/singularity/pilon

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gafl/singularity/picard

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gafl/singularity/pear

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gafl/singularity/nudup

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gafl/singularity/noblast

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gafl/singularity/nanoplotcompstat

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gafl/singularity/nanopack

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gafl/singularity/mummer

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gafl/singularity/interpro

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gafl/singularity/hisat

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gafl/singularity/genometools

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gafl/singularity/filtlong

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gafl/singularity/deeptools

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gafl/singularity/crossmap

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gafl/singularity/circos

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gafl/singularity/blastpp

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gafl/singularity/arcs

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gafl/singularity/Rsamtools_graph

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gafl/singularity/R_base

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gafl/singularity/R_QTLseqr

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gafl/singularity/QTLseqr

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gafl/singularity/Allmine

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gafl/singularity/10Xgenomics

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gafl/singularity/singularity_installation

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gafl/thaliadb/ThaliaDB_singularity

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gafl/singularity/nanocomp

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gafl/singularity/canu

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gafl/singularity/nanofilt

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gafl/singularity/porechop

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gafl/singularity/smartdenovo

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