forgemia.inra.fr / genotoul-bioinfo 19 Dépôts
Projects of the Genotoul platform
genotoul-bioinfo/metagwgs
metagWGS is a workflow dedicated to the analysis of metagenomic data. It allows assembly, taxonomic annotation, and functional annotation of predicted genes. Since release 2.3, binning step with the possibility of cross-alignment is included. It has been developed in collaboration with several CATI BIOS4biol agents. Funded by Antiselfish Project (Labex Ecofect), ExpoMicoPig project (France Futur elevage) and SeqOccIn project (CPER - Occitanie Toulouse / FEDER), ATB_Biofilm funded by PNREST Anses, France genomique (ANR-10-INBS-09-08) and Resalab Ouest.
dernière synchronisation: il y a 9 mois - étoiles: 9 - forks: 2
genotoul-bioinfo/use-nextflow-nfcore-course
Cours accessible à https://genotoul-bioinfo.pages.mia.inra.fr/use-nextflow-nfcore-course/
dernière synchronisation: il y a 9 mois - étoiles: 4 - forks: 1
genotoul-bioinfo/pangenome_hackathon
dernière synchronisation: il y a 10 mois - étoiles: 1 - forks: 0
genotoul-bioinfo/ngspipelines
NGSPipelines integrates pipelines and user interfaces to help biologists to analyse data outputed from biological applications such as RNA-seq, sRNA-seq, Chip-Seq, BS-seq, and so on.
dernière synchronisation: il y a 9 mois - étoiles: 0 - forks: 0
genotoul-bioinfo/metagwgs-test-datasets
Repository containing input and output datasets to perform tests on metaGWGS
dernière synchronisation: il y a 10 mois - enregistré: il y a environ un an - étoiles: 1 - forks: 0
genotoul-bioinfo/mixKernel
mixKernel is a multiple kernel framework that allows to integrate multiple datasets of various types into a single analysis. The package is published on CRAN: https://cran.r-project.org/package=mixKernel
dernière synchronisation: il y a 9 mois - étoiles: 1 - forks: 0
genotoul-bioinfo/dgenies-docker
Docker files to test and deploy dgenies
dernière synchronisation: il y a 10 mois - enregistré: il y a environ un an - étoiles: 0 - forks: 0
genotoul-bioinfo/tips-for-sustainable-computing
Provide tips to the platform users to use less resources.
dernière synchronisation: il y a 10 mois - enregistré: il y a environ un an - étoiles: 0 - forks: 1
genotoul-bioinfo/dgenies
Dotplot large Genomes in an Interactive, Efficient and Simple way
dernière synchronisation: il y a 9 mois - étoiles: 3 - forks: 0
genotoul-bioinfo/jflow
We introduce jflow, a Workflow Management System (WMS), composed of Jquery plugins which can easily be embedded in any WEB application and a Python library providing all requested features to setup, run and monitor workflows.
dernière synchronisation: il y a 9 mois - étoiles: 0 - forks: 0
genotoul-bioinfo/jvenn
jvenn is a plug-in for the jQuery Javascript library. It is a flexible tool, based upon the venny tool first developed by J.C Oliveros (Oliveros, J.C (2007) VENNY, An integrative tool for comparing lists with Venn Diagrams).
dernière synchronisation: il y a 9 mois - étoiles: 1 - forks: 1
genotoul-bioinfo/srna-tabac
This project is dedicated to targets prediction of bacterial non-coding RNA and their visualisation through a web interface.
dernière synchronisation: il y a 9 mois - étoiles: 0 - forks: 0
genotoul-bioinfo/pyrocleaner
The pyrocleaner is intended to clean the reads included in the sff file in order to ease the assembly process.
dernière synchronisation: il y a 9 mois - étoiles: 0 - forks: 0
genotoul-bioinfo/tSNPannot
The software enable to retrieve information (exon boundaries, mutation effect, known SNP...) about transcribed SNP. It's based on ensembl API.
dernière synchronisation: il y a 9 mois - étoiles: 0 - forks: 0
genotoul-bioinfo/dgenies-viewer
A viewer using D-Genies
dernière synchronisation: il y a 9 mois - étoiles: 0 - forks: 0
