forgemia.inra.fr / pappso 23 Repositories
PAPPSO team http://pappso.inrae.fr/
pappso/mcqr
MCQR is a comprehensive set of objects and function for R to handle MassChroQ results.
Last synced at: 6 months ago - Stars: 0 - Forks: 0
pappso/masschroq
MassChroQ (Mass Chromatogram Quantification) is a powerful and versatile software that performs retention time alignment, XIC extraction, peak detection and quantification on data obtained from liquid chromatography-mass spectrometry techniques.
Last synced at: 6 months ago - Stars: 0 - Forks: 0
pappso/pappsomspp
PAPPSOms++ is a comprehensive C++ library including useful functions to handle mass spectrometric data, either in a proteomics setting or for data visualization. Abstractions include peptides, proteins, isotopic clusters, mass/drift spectra...
Last synced at: 6 months ago - Stars: 0 - Forks: 1
pappso/groupingprotein
GroupingProtein does filtering, protein inference and grouping of mass MS/MS identification result (thousands of samples, high resolution mass spectrometers)
Last synced at: 6 months ago - Stars: 0 - Forks: 0
pappso/i2masschroq
i2MassChroQ (identification & inference -- mass chromatogram quantification) is the successor of X!TandemPipeline-Java. Following a full rewrite in C++17 and integration of the MassChroQ module, i2MassChroQ features a quantitative proteomics solution
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
pappso/massxpert2
massXpert2 (of the http://www.msxpertsuite.org software collection) is a desktop-oriented program that allows one to create polymer chemistry definitions. The definitions are then used to perform calculations in a desktop calculator-like manner and to perform sophisticated polymer sequence mass spectrometry simulations.
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
pappso/pappsoms-tools
set of usefull mass spectrometry and proteomics utilities used by the PAPPSO team (http://pappso.inra.fr/). Get ion tables from peptides, SVG drawings of MS/MS annotated spectrum, expected intensity ratio of isotopes from a peptide....
Last synced at: 6 months ago - Stars: 0 - Forks: 0
pappso/specoms
C++ implementation of SpecOMS and new developments
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
pappso/libodsstream
Lightweight C++ and Java library to produce Open Document Spreadsheet (.ods) files. The main goal is to write data as simply as writing it to a simple text file (csv or tsv). Libodsstream allows yout to read and write ODS files as stream
Last synced at: 6 months ago - Stars: 0 - Forks: 0
pappso/libpwizlite
A library that contains a subset of the ProteoWizard libpwiz library with code mainly aimed at loading MS files (XML-based and MGF).
Last synced at: 6 months ago - Stars: 0 - Forks: 0
pappso/libmass
*libmass* is a C++ static library that is referenced from other projects. The *libmass* static library is designed to enshrine the non-gui functionalities needed by the following two projects: * msXpertSuite/massXpert; * msXpertSuite/mineXpert2. *libmass* has a companion GUI library, *libmassgui* , that is designed to enshrine the GUI functionalities needed by the same two projects above.
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
pappso/libmassgui
libmassgui is a C++ static library that is referenced from other projects. The libmassgui static library is designed to enshrine the gui functionalities needed by the following two projects: msXpertSuite/massXpert; msXpertSuite/mineXpert2. libmassgui has a companion GUI library, libmass , that is designed to enshrine the non-GUI functionalities needed by the same two projects above.
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
pappso/repository-minexpert2
Repository for the mineXpert2 packages
Last synced at: 6 months ago - Stars: 0 - Forks: 0
pappso/repository-massxpert
Repository for the massXpert packages
Last synced at: 6 months ago - Stars: 0 - Forks: 0
pappso/respository-massxpert2
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
pappso/metaprotr
Package for post-processing metaproteomics data
Last synced at: 6 months ago - Stars: 0 - Forks: 0
pappso/xtpcpp
X!TandemPipeline is a free software (GPL v3) that helps you to filter and group your peptide/protein identifications from MS/MS mass spectra. Publication: J. Proteome Res. 2017, 16, 2, 494–503 -- https://doi.org/10.102
Last synced at: 5 months ago - Stars: 1 - Forks: 0
pappso/massxpert
massXpert (of the http://www.msxpertsuite.org software collection) is a program that allows one to define brand new polymer chemistry definitions, to use them to define polymer sequences and to perform a large array of chemical simulations on them.
Last synced at: 6 months ago - Stars: 0 - Forks: 0
pappso/beads
"beads" (billes en Français) est un logiciel de détection et de quantification de spots sur des images de gels d'électrophorèse bidimensionnelle.
Last synced at: 6 months ago - Stars: 0 - Forks: 0
pappso/hipl
HIPL stands for heavy isotope protein labelling. It is basically a project where we use IsoSpecPy for simulating isotopic clusters of peptides that were labelled with 15N.
Last synced at: 6 months ago - Stars: 0 - Forks: 0