forgemia.inra.fr
umr-gdec/agr-ancestral-genome-reconstruction
Last synced at: over 1 year ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
umr-tetis/stac/stac-notes
Share some notes and scripts on the use of STAC.
Last synced at: 7 months ago - Stars: 1
in-wop/vgest
VGEST is software developped in Pascal which serve to calculate water volume limits to be respected in reservoirs set up in parallel on a hydrographic network, to allow the best future satisfaction of a common downstream management objective.
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
get-nextflow-ngl-bi/wf-illumina-nf
Pipeline Nextflow
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 2 - Forks: 0
inter_cati_omics/hackathon_inter_cati_decembre_2022/atelier_4_si_brapi/hackathon-brapi
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
jt/presentation-vue
https://j-touchais-pages.pages.mia.inra.fr/presentation-vue
Last synced at: over 1 year ago - Pushed at: 11 months ago - Stars: 0
metexplore/metexplore-api/metexplore3-nodejs-api
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0
inter_cati_omics/hackathon_octobre2021/atelier_repro
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migale/dubii_magali_monnoye
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
metagenopolis/eskrim
ESKRIM: EStimate with K-mers the RIchness in a Microbiome
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formationcalcul2023/formation-slurm
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 2 - Forks: 1
adminforgemia/doc-public
Dépôt public de documentations pour les utilisateurs de ForgeMIA. Contact : support-forgemia@inra.fr
Last synced at: 5 months ago - Stars: 8
miat-com/miat_website
[Site web de MIAT](https://miat.inrae.fr), avec wowchemy (hugo). Pour voir vos modifications après un commit, la preview du site web est là : https://miat-com.pages.mia.inra.fr/miat_website Assignez vos merges requests pour qu'elles soient passés sur le "vrai" site web, à votre correspondant d'équipe : @benjamin.linard, @gauthier.quesnel, @philippe.bordron ou @rtrepos
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 4
singularity/bioinfo/bwa_v0.7.17
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
singularity/bioinfo/fastqc_v0.11.8
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
urep/dev_utils/gitlab-project-templates/r-package-project-template
A Gitlab project template for an R package. Use it as a base for a new R package project. See README for details.
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
lisc/gender-diff-model
https://lisc.pages.mia.inra.fr/gender-diff-model/ Web application for playing with the gender differenciation model published by S. Huet, F. Garguilo and F. Pratto in 2020.
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
singularity/prebuilt/miniconda3-py39
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
formationcalcul2022/formation-linux
Initiation à linux
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0
dynamo/introduction-to-modelling-in-epidemiology
Introduction à la Modélisation en Épidémiologie Animale
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0
urep/dev_utils/gitlab-ci-templates
Some templates useful for Gitlab CI Yaml scripts.
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 3 - Forks: 0
mathscell/vkvh
kvh viewer
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
singularity-mesolr/acta-cfd-1.0.0
Container pour l'équipe ACTA composé de incompact3d, PALM, WRF et OpenFoam en Ubuntu 18.04. Johan Carlier, Laurence Wallian
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
urep/dev_utils/fortran_utils/netcdf
Library to manage in Fortran machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0
geapsi/pipeline/specifics_ortho_kb
Nextflow pipeline creating a Neo4j Ortho_KB database.
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
metexplore/cbm/pva
pathway variability analysis using the miom library
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
dipso/eosc-pillar/dataverse-d4science-connector
Connecteur permettant les échanges de données entre dataverse et D4Science (https://www.d4science.org/)
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
inter_cati_omics/hackathon_octobre2021/shinyDataScience
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 1
umrf/exploremetabar-docker
Docker recipe for exploremetabar Shiny App.
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
migale/trainings
Repository of Migale trainings https://trainings.migale.inrae.fr/
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
inter_cati_omics/hackathon_octobre2021/hackathon_datascience_2021
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 3 - Forks: 1
pole-migrateurs/Acoustic/acoustic-gui
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 1
dipso/kubespray
Fork from https://github.com/kubernetes-sigs/kubespray.git
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 1
dynamo/software/emulsion-training
On-line doctoral training on EMULSION
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0
dipso/helm-charts-sill
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
singularity/bioinfo/sambamba_v0.7.1
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
umr-tetis/stac/simplestac
STAC tools to simplify STAC use: local STAC creation, filter and process STAC ItemCollections (local and remote). __[Documentation](https://umr-tetis.pages.mia.inra.fr/stac/simplestac)__
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 1
metagenopolis/benchmark_mock
Benchmark second and third generation sequencing technologies on 3 synthetic microbial communities
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 1
dipso/logigrammes-ouverture
Logigrammes produits par la DipSO et la DAJ INRAE permettant d'identifier les conditions possibles d'ouverture des données et codesscientifiques.
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
cropmetapop/CMPynalyser
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umr-astre/notification-delays
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
umr-astre/training/2023_lidiski_data-management
Workshop on data management. https://umr-astre.pages.mia.inra.fr/training/2023_lidiski_data-management/
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
pegase/pegase-fair
FAIR-DATA management application stack for laboratory experiment
Last synced at: 6 months ago - Stars: 0 - Forks: 0
metexplore/met4j-group/tutorialmet4j
Tutorial for met4j
Last synced at: 6 months ago - Stars: 0 - Forks: 0
GNet/appinetwork
Construction and Analysis of Protein-Protein Interactions (PPI) NETWORKS for complexes and biological processes
Last synced at: 6 months ago - Stars: 0 - Forks: 1
GNet/einkorn_grain_transcriptome
Transcriptomic results of the projet of Bonnet et al
Last synced at: 6 months ago - Stars: 0 - Forks: 0
umrf/ranomaly
https://umrf.pages.mia.inra.fr/ranomaly/
Last synced at: 6 months ago - Stars: 2 - Forks: 2
sk8/sk8-apps/ettis/shinyidea
ShinyIDEA permet d'insérer un fichier de données issues de la méthode IDEA4 et de visualiser des premiers résultats synthétiques avant d'exporter des rapports complets sous différents formats. https://shinyidea.sk8.inrae.fr
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
umr-gdec/gps
Scripts used in: "Integration of genomic selection into winter-type bread wheat breeding schemes: a simulation pipeline including economic constraints" S. Ben-Sadoun, A. Fugeray-Scarbel, J. Auzanneau, G. Charmet, S. Lemarié, S. Bouchet
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
beyond/beyond-vre/dataflow-beyond
R scripts for Geonetwork metadata feeding. The scripts are based on the geometa ISOMetadata and geonapi examples given by Emmanuel Blondel (Emmanuel Blondel. (2018, August 22), Blondel, Emmanuel. (2018, April 27)).
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
umr-astre/guidelines/statstips
Source repository for https://umr-astre.pages.mia.inra.fr/guidelines/statstips/
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
gqe-base/coda
Published version of CODA (Crossover Distribution Analyzer) with graphical interface, for Linux, Mac, and Windows
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
umr-astre/guidelines/doc-references
Dépôt publique de documentation de référence sur logiciels, méthodes ou pratiques pour les chercheurs, collaborateurs et étudiants de l'UMR ASTRE. Contact : facundo.munoz@cirad.fr
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 1
abisoft-gqe/metaqtl
MetaQTL is a Java package designed to perform the integration of data from the field of gene mapping experiments (e.g molecular markers, QTL, candidate genes, etc...). This package consists in a modular library and several programs written in pure Java. These programs can perform various tasks, including formatting, analyzing and visualizing data or results produced by MetaQTL.
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
metagenopolis/journal_simulations
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
hydrodemos_public/demosbagoffloods
Pages web interactives, test
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genotoul-bioinfo/dgenies-docker
Docker files to test and deploy dgenies
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formations-statistique/statswithasterics
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
blockchain-esr/bloxberg-certify-metadata
Last synced at: over 1 year ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
sk8/sk8-apps/metexplore/samba
SAMBA (R) est une interface pour analyser les résultats de sampling de réseaux métaboliques générés à partir de SAMBApy sous Python. Elle est composée d'une une partie comparaison (calcul de différence) et une partie visualisation graphique des résultats. https://samba.sk8.inrae.fr/
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0
cassiopee/nghyd
Angular interface of the Cassiopée software Production version of Cassiopée is available at https://cassiopee.g-eau.fr
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
pole-migrateurs/ore-diapfc/bresle/length-of-sea-trout-returns
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
ecoelec/ecoelecAnalysis
Doc : https://ecoelec.pages.mia.inra.fr/ecoelecAnalysis/index.html
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dipso/hal-inrae/alienor
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umr-astre/CameroonBatEbola_Public
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
herelles/herelles-corpora-builder
Automatic protocol for the constitution of spatio-temporal and thematic corpora for the Herelles project.
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
metexplore/metexplore-api/metexplore3-api-types
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get-plage_public/ngs_tools
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0
inter_cati_omics/hackathon_octobre2021/django-vue-interface
Interface en vue.js pour l'atelier Django-vue 2021.
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0
pherosensor/pherosensor-toolbox
Toolbox for the inverse problem solution to identify sources of pheromone emission.
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 1
birdnet/FlywayNet_experiments
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
biocom/data_paper_rmqs1_16s
Datapaper describing dataverse collection on RMQS1 microbiological dataset (The French Soil Quality Monitoring Network). https://entrepot.recherche.data.gouv.fr/dataverse/rmqs_microbio
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
pappso/libpwizlite
A library that contains a subset of the ProteoWizard libpwiz library with code mainly aimed at loading MS files (XML-based and MGF).
Last synced at: 6 months ago - Stars: 0 - Forks: 0
pappso/pappsoms-tools
set of usefull mass spectrometry and proteomics utilities used by the PAPPSO team (http://pappso.inra.fr/). Get ion tables from peptides, SVG drawings of MS/MS annotated spectrum, expected intensity ratio of isotopes from a peptide....
Last synced at: 6 months ago - Stars: 0 - Forks: 0
metexplore/tools/twin-search
Tool for 'Twin Peaks' analysis, detecting pairs of heavy & native forms of compounds in mz data
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
sk8/sk8-apps/gqe/shinyteach/gqe-evolexp
https://gqe-evolexp.sk8.inrae.fr
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
urep/dev_utils/fortran_utils/docker-fortran-intel-compiler
Docker image with Intel Fortran Compiler (and some other dev tools).
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0
singularity-mesolr/r-stan-nguyent
R-stan for Meso@LR (Truong An Nguyen)
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game-theory-tools-group/nash-eq-wilson-to-binder
A Dockerfile exposing to binder the Nash Eq Wilson
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game-theory-tools-group/gtnash
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 4
stacomi/stacomirtools
Database connection utilities, RODBC and pool
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0