gitlab.cirad.fr
selmet/livtools/laser
Information system for studying livestock production and animal health using animal-based herd monitoring
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selmet/livtools/mmage
R package for simulating age-structured population matrix models
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jean-francois.rami/rsagacity
Last synced at: about 1 year ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
agap/bioinformatics/training_teaching/muse_lmd5_bioagro_ue_haa906v_bogc/2022_student
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florilege/florilege_documentation
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mathias.christina/script_report
Last synced at: about 1 year ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
v.guignon/greenphyl
GreenPhyl database project. Contains common sources of all GreenPhyl instances.
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amap/java-utils
Common classes to all Archimed related projects
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selmet/tdisplay
R Tool Box for Data Importation and Display
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astre/vaccination-determinants
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astre/training/gitlab-tutorial
A self-paced course on git and GitLab.
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selmet/livtools/dynmod
A spreadsheet interface for demographic projections of extensively managed livestock populations
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agap/bioinformatics/training_teaching/genomehubuse/vgh
Examples of how to use the Vanilla Genome Hub
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amap/archimed2018
ARCHIMED modeling platform is used to simulate the biophysical processes such as leaf irradiation, transpiration, temperature and ultimately carbon assimilation. By doing so, detailed information can be integrated from the individual leaf scale up to the individual plant scale, even within complex stands such as agroforestry systems. Simple numerical methods are used for solving multiple feedback between light, energy, water and CO2 transfers at leaf, plant and plot scales. Numerical calculations applied at different scales allow simple implementation of complex models involving intricate processes. https://archimed-platform.github.io/archimed-phys-user-doc/
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forets-societes/ressources
Documentations, snippets, ...
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phim/LeAFtool
IPSDK macro_interface
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agap/workflows/comparativegenomics
A Snakemake workflow to identify syntenic blocks and orthogroup for a set of species
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forets-societes/projets/flcd
Package R / Fusion-Lasso Change Detection method
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selmet/tatale
R package: Tools for Assessment with Transformation and Aggregation using simple Logic and Expertise
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astre/presentations/202403_astre_chantier-urgence-climatique
https://astre.gitlab.cirad.fr/presentations/202403_astre_chantier-urgence-climatique
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astre/training/modelisation-dynamique-epidemiologie
Modèles mathématiques appliquées à l'épidémiologie https://astre.gitlab.cirad.fr/training/modelisation-dynamique-epidemiologie
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benjamin.heuclin/vcgss
Last synced at: about 1 year ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
selmet/SahelFlux
Agent-based and stock-flow model to assess the effect of crop-livestock integration on carbon balance in Sahel territories.
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0
agap/workflows/rna_seq
A Snakemake workflow for producing count matrix suitable for differential expression analysis and formatted for DIANE.
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agap/bioinformatics/training_teaching/elixir_excelerate_pgaa_2018
Elixir french node (IFB) training on [Plant Genome Assembly and Annotation](https://ressources.france-bioinformatique.fr/fr/evenements/plant-genome-assembly-and-annotation). [ELIXIR-EXCELERATE](https://elixir-europe.org/about-us/how-funded/eu-projects/excelerate) project was funded by the European Commission within the Research Infrastructures programme of Horizon 2020 (grant agreement number 676559).
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cirad/documentation
Documentation pour débuter sur la forge logicielle du Cirad. Elle inclut l'organisation de la forge basée sur des groupes avec référents, les bases de Git et des liens vers les documentations officielles gitlab.com et git-scm.com
Last synced at: 7 months ago - Pushed at: 11 months ago - Stars: 5
selmet/livtools/laserdemog
R package using a discrete-time approach for estimating demographic parameters from animal-based monitoring Laser data
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agap/bioinformatics/training_teaching/operating_method
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astre/templates/slides-quarto
Description of the presentation topic. Include a link to the URL where the slides are published, like so. https://astre.gitlab.cirad.fr/templates/slides-quarto/
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agap/workflows/genomeassembly
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amap/diagarchi/diagarchi-cordova
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amap/diagarchi/diagarchi-flutter
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astre/PPRreads_ASSEMBLY
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agap/workflows/snakeblast
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agap/workflows/indexing_genome
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selmet/hamac
Herds Activity Mapping and Analytical Classification routine
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agap/giv/sorghum_bcnam_analysis
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agap/workflows/cactus-pangenome
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selmet/livtools/12mo
Retrospective method for estimating annual demographic parameters in ruminants livestock herds
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selmet/livtools/t12mo
R package for calculating demographic parameters of livestock populations from 12MO survey data
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forets-societes/projets/c4f/transparence-des-houppiers
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agap/bioinformatics/training_teaching/muse_lmd5_bioagro_ue_haa906v_bogc/2021_student
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agap/workflows/funcannotate
# A snakemake workflow for functional annotation
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agap/workflows/GATK
A snakemake workflow for SNP Calling using GATK4
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acottin/lai-comparison
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agap/workflows/gene-family
A snakemake workflow for phylogenetic analysis of protein families
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noisymputer/noisymputerstandalone
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mathias.christina/mosicas
Sugarcane crop growth model
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mathias.christina/script_peerreviewedarticle
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noisymputer/noisymputermain
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axe-tim-aida/workshop/intro_git_sur_rstudio
Tuto d'introduction à Git et GitLab depuis Rstutio
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xavier.rouviere/gtd
Projet pour mettre en oeuvre la méthode Getting Things Done de David Allen avec les outils Cirad
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eco-sols/maespa
MAESPA model based on Remi Vezy branch of the GitHub repository : https://maespa.github.io/
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agap/workflows/cutandtag
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selmet/livtools/livtools
Estimation and Simulation of Animal Production
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forets-societes/projets/c4f/commercial_species
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