gitlab.pasteur.fr / bli
bli/qaf_demux
Quality-aware fastq demultiplexer. The goal is to demultiplex fastq files where the barcode is contained in the read at a known position.
Last synced at: about 1 year ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
bli/ricochet-ocaml
Modeling ricochet robot in OCaml
Last synced at: about 1 year ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
bli/libworkflows
Some helpers for my HTS snakemake workflows.
Last synced at: about 1 year ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
bli/libhts
Some helpers for HTS data analyses.
Last synced at: about 1 year ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
bli/libdeseq
Some helpers to call DESeq2 using rpy2 in python.
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bli/libsmallrna
Defining small RNAs in C. elegans.
Last synced at: about 1 year ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
bli/plotting_scripts
Some scripts to plot results from my HTS pipelines.
Last synced at: about 1 year ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0
bli/snakemake_wrappers
Some wrappers for my snakemake HTS pipelines
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bli/libreads
Utilities to make stats and plots from reads.
Last synced at: about 1 year ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
bli/bam25prime
Utilities to collapse reads in bam files to their 5' end
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bli/paraccumulators
Some experiments with parallel and functional programming.
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bli/libbamutils
Miscellaneous python things to deal with bam files
Last synced at: about 1 year ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
bli/libriboseq
Miscellaneous stuff to deal with Ribo-seq data.
Last synced at: about 1 year ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
bli/libclusterseq
Utilities to cluster sequences.
Last synced at: about 1 year ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
bli/libconsensus
Utilities to make a consensus from a sequence alignment.
Last synced at: about 1 year ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
bli/gtf2attr
Small Haskell utility that extracts an attribute from gtf data.
Last synced at: about 1 year ago - Pushed at: 11 months ago - Stars: 0
bli/libcodonusage
Python utilities to deal with codon usage.
Last synced at: about 1 year ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
bli/genome_preparation
Last synced at: about 1 year ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0