statistical-genetics/manocca

MANOCCA test is based on covariance. This project implements MANOCCA, MANOVA and provides an simulation environment and an explainer.

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statistical-genetics/jass_suite_pipeline

A nextflow pipeline to analyze GWAS Summary Statistics with JASS. The pipeline execute: - clean and harmonize data with jass_preprocessing - if specified impute data with RAISS - create input data for JASS - analyse group of trait with jass

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statistical-genetics/jass_preprocessing

Script to pre-process GWAS inputs

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statistical-genetics/raiss

A python package to impute the SNP summary statistics from neighboring SNPs summary statistics by taking advantage of linkage desiquilibrium

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statistical-genetics/jass

A web interface for the Joint Analysis of GWAS Summary Statistics.

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statistical-genetics/multitrait_power_traitselection

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statistical-genetics/gs_project_template

A cookie cutter for the genetic statistics unit

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statistical-genetics/j2s

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statistical-genetics/runCMS

Pipeline to run CMS in large-scale analyses

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statistical-genetics/PaintorPrep

scripts to prepare gwas data for using PAINTOR (https://github.com/gkichaev/PAINTOR_V3.0)

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statistical-genetics/VarExp

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statistical-genetics/hgcovid_imputation

Simulation study to determine the impact of summary statistic imputation on a meta-analysis

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statistical-genetics/wiki

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